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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174944297_174945093_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174944297 - 174945093
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CAGAAATTAATG
Flanking Amino Acid:
SGRARYSKNWNVEKYSSYPV
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
44.3
-0.5
1.8
43.54
41.8

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154