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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174947776_174948317_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174947776 - 174948317
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGGT
5'SS Class:
major
3'SS Sequence:
TCCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GTATAAATAATT
Flanking Amino Acid:
AYINADSSIEGNYTLRVDCT
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
71.2
38.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
39.8
-1.1
3.3
58.3
46.4
Minor BPS
47.6
-0.1
2
69.51
40.6

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154