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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174948382_174948624_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174948382 - 174948624
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
AGTTCATCAACA
Flanking Amino Acid:
GLLGSTEWAEENAKLLQARG
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
77.1
0.61
0.7
72.5
25.8
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
60.3
0.32
1.8
72.84
38.2

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154