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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174948708_174950044_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174948708 - 174950044
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTGTAACA
Flanking Amino Acid:
VRSFGKLKKEGWRPRRTVIF
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.5
0.89
0.7
85.1
27.9
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
67.8
0.55
2
81.43
34

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154