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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174952500_174953791_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174952500 - 174953791
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACA
Flanking Amino Acid:
IGYHDAESLLRNMGGSAPPH
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.9
78.7
33.2
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
76.8
0.84
1.5
88.12
28.6

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154