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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174953886_174954735_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174953886 - 174954735
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAGTTGTAAACA
Flanking Amino Acid:
DPLTPGYPAKEYAYRLDKAS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
46.2
-0.2
2.3
58
41.8

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154