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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174960404_174962928_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174960404 - 174962928
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AATTCCTGATCC
Flanking Amino Acid:
MKAENIKQFLFNFTQLPHLA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.4
43.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
87.2
0.84
0.6
81.3
30.8
Minor 5ss
43.7
-0.7
3
63.7
41.8
Minor BPS
61.1
0.33
1.7
71.47
39.1

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154