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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175051132_175052143_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175051132 - 175052143
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATTGCTTGAATT
Flanking Amino Acid:
LLAFLRGSQKVASRKTRRLI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
70
0.5
1
67
39.8
Major PPT
77.6
0.62
0.8
78.1
29.1
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
63.8
0.51
1.5
78.9
37.7

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038844
175037575 - 175152043
114469
ENSAPLT00000026753
175037575 - 175171491
133917
ENSAPLT00000013095
175038220 - 175152063
113844