Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175052958_175054922_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

175052958 - 175054922

Intron Length:

1965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCAG

5'SS Class:

strong_major

3'SS Sequence:

GACTGCTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TTTCCTCTGACT

Flanking Amino Acid:

AINAAHYRGEDPRKLLFATV

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

64.9

42.8

Major BPS

71.6

0.54

33.1

Major PPT

73.9

0.54

69.2

41.4

Minor 5ss

31.8

-2.1

37.6

47.1

Minor BPS

0.55

1.7

85.73

33.8

Associated Gene:

Gene:

NOX4

Ensembl Gene ID:

ENSAPLG00000012543

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038844

175037575 - 175152043

114469

ENSAPLT00000026753

175037575 - 175171491

133917

ENSAPLT00000013095

175038220 - 175152063

113844