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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175054951_175058154_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
175054951 - 175058154
Intron Length:
3204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTAAGTTATCA
Flanking Amino Acid:
EDPRKLLFATVPGLTGVFMV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79.2
0.66
0.8
77.2
36.8
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
44.7
-0.4
2.4
62.08
43.5

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038844
175037575 - 175152043
114469
ENSAPLT00000026753
175037575 - 175171491
133917
ENSAPLT00000013095
175038220 - 175152063
113844