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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175058228_175062725_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175058228 - 175062725
Intron Length:
4498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
TAGCATTGAACC
Flanking Amino Acid:
LMCTASTYAIRISNYDIFWY
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
67.1
0.42
1
59
37.9
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
49.3
-0
1.6
59.25
39.1

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038844
175037575 - 175152043
114469
ENSAPLT00000026753
175037575 - 175171491
133917
ENSAPLT00000013095
175038220 - 175152063
113844