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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175062807_175067223_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175062807 - 175067223
Intron Length:
4417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCTTTGTTATTT
Flanking Amino Acid:
FYMLLMLHVSGGVLKYQTNL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.5
0.89
0.6
85
22.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
50.3
0.09
2.3
74.56
43.3

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038844
175037575 - 175152043
114469
ENSAPLT00000026753
175037575 - 175171491
133917
ENSAPLT00000013095
175038220 - 175152063
113844