About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175140965_175146011_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175140965 - 175146011
Intron Length:
5047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATGTCATAACT
Flanking Amino Acid:
LFDEIAKCNRRKTIGVFCCG
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
59.3
0.37
1.7
76.29
40

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013095
175038220 - 175152063
113844
ENSAPLT00000038844
175037575 - 175152043
114469
ENSAPLT00000026753
175037575 - 175171491
133917