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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175146102_175152035_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175146102 - 175152035
Intron Length:
5934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAGTA
5'SS Class:
major
3'SS Sequence:
CCTGCCTGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
LSNSSNSYGTSVLKSAPSS*
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
69
35.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70
0.45
1
60.9
40.2
Minor 5ss
36.5
-1.5
3.3
47.7
47.8
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
NOX4
Ensembl Gene ID:
ENSAPLG00000012543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013095
175038220 - 175152063
113844