Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175205129_175220417_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

175205129 - 175220417

Intron Length:

15289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

GTTATTAAACTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

AGTTATTAAACT

Flanking Amino Acid:

SPASFFSSWQLYCQNQKQTD

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

60.1

0.23

1.1

53.6

44.9

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

57.1

0.3

1.8

76.07

40.4

Associated Gene:

Gene:

TYR

Ensembl Gene ID:

ENSAPLG00000012676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013210

175170443 - 175221236

50794