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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175240618_175246667_F

Intron Information:

Intron Rank:
132829
Intron Class:
major
Intron Phase:
Intron Coordinates:
175240618 - 175246667
Intron Length:
6050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTAT
5'SS Class:
major
3'SS Sequence:
TGATGCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.5
29.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.3
0.52
1
65.5
40.9
Minor 5ss
49.7
-0
2.5
66.5
39
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047776
175233757 - 175247223
13467