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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175386056_175471459_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175386056 - 175471459
Intron Length:
85404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCATTTATCC
Flanking Amino Acid:
GLAGEFLLLGSDGWADRYDV
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.1
0.77
0.8
78.2
30.4
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
57.7
0.22
1.8
72.85
37.9

Associated Gene:

Gene:
GRM5
Ensembl Gene ID:
ENSAPLG00000009575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010003
175253254 - 175528231
274978