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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175492204_175496044_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175492204 - 175496044
Intron Length:
3841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTTGCTAAACC
Flanking Amino Acid:
SEPCEKGQIKVIRKGEVSCC
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
81.4
0.71
0.8
79.8
32.1
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
59.8
0.29
2.1
75.04
41.8

Associated Gene:

Gene:
GRM5
Ensembl Gene ID:
ENSAPLG00000009575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010003
175253254 - 175528231
274978