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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175519492_175521029_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175519492 - 175521029
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATATTT
Flanking Amino Acid:
MGNGGRATMTSEESVCIPES
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.9
72.6
37.1
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
55.7
0.26
1.8
79.9
36.7

Associated Gene:

Gene:
GRM5
Ensembl Gene ID:
ENSAPLG00000009575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010003
175253254 - 175528231
274978