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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175521192_175527408_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
175521192 - 175527408
Intron Length:
6217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTTAAGAAT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCTGTTTACA
Flanking Amino Acid:
QDCQLRDLLKHSNGKSVSWA
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.2
58.1
40.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
31.8
-2.1
3.2
46.6
42.8
Minor BPS
49.8
-0
2.3
72.36
39.3

Associated Gene:

Gene:
GRM5
Ensembl Gene ID:
ENSAPLG00000009575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010003
175253254 - 175528231
274978