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Intron Name: Anas_platyrhynchos_platyrhynchos_1_175579560_175587245_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

175579560 - 175587245

Intron Length:

7686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACACCT

5'SS Class:

major

3'SS Sequence:

TTCTTTCTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGCAATGATT

Flanking Amino Acid:

GCPKVYPFAPGPVEKTVLVN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.2

41.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.8

0.85

0.6

84.2

23.8

Minor 5ss

40.1

-1.1

3.2

58.2

45.9

Minor BPS

49.8

0.07

77.26

39.3

Associated Gene:

Gene:

CTSC

Ensembl Gene ID:

ENSAPLG00000009381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009776

175579406 - 175604190

24785