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Intron Name: Anas_platyrhynchos_platyrhynchos_1_175587392_175597624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

175587392 - 175597624

Intron Length:

10233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCACATTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

AAGTATTTAACA

Flanking Amino Acid:

NNYKWFAFFKYKKEGQKVTS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.8

1.01

0.7

85.4

19.4

Major BPS

79.5

0.73

0.9

36.9

Major PPT

0.61

0.9

69.4

35.2

Minor 5ss

34.1

-1.8

2.8

39.9

46.1

Minor BPS

63.9

0.43

1.5

68.01

38.1

Associated Gene:

Gene:

CTSC

Ensembl Gene ID:

ENSAPLG00000009381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023432

175585696 - 175604190

18495

ENSAPLT00000009776

175579406 - 175604190

24785