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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175597792_175598240_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175597792 - 175598240
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GCTTTCTTATCA
Flanking Amino Acid:
NQLPLHKPQGRLSSRRYVHN
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
65.1
0.47
1.6
71.41
40.9

Associated Gene:

Gene:
CTSC
Ensembl Gene ID:
ENSAPLG00000009381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009776
175579406 - 175604190
24785
ENSAPLT00000023432
175585696 - 175604190
18495