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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175598397_175599998_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175598397 - 175599998
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCAG
5'SS Class:
major
3'SS Sequence:
CTTATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
RAGGLYSRTSRPKPAPLTPE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.5
45
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.6
0.8
0.7
84.7
30
Minor 5ss
29.1
-2.4
3.4
38.3
46.7
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
CTSC
Ensembl Gene ID:
ENSAPLG00000009381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023432
175585696 - 175604190
18495
ENSAPLT00000009776
175579406 - 175604190
24785