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Intron Name: Anas_platyrhynchos_platyrhynchos_1_175600115_175602779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

175600115 - 175602779

Intron Length:

2665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTTTTTCTATTT

Flanking Amino Acid:

VNYVSPVRNQASCGSCYAFA

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

73.8

0.59

1.3

72.8

Major PPT

86.2

0.81

0.6

22.5

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

54.8

0.23

1.9

79.65

37.1

Associated Gene:

Gene:

CTSC

Ensembl Gene ID:

ENSAPLG00000009381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023432

175585696 - 175604190

18495

ENSAPLT00000009776

175579406 - 175604190

24785