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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175631754_175644227_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175631754 - 175644227
Intron Length:
12474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTCTCTTTCACT
Flanking Amino Acid:
FVGWFETSAKENININEASR
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.8
0.76
0.8
77.7
29.8
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
64.9
0.55
1.8
78.9
44

Associated Gene:

Gene:
RAB38
Ensembl Gene ID:
ENSAPLG00000009310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009690
175622956 - 175644380
21425