Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17583059_17588536_R

Intron Information:

Intron Rank:

147042

Intron Class:

major

Intron Phase:

Intron Coordinates:

17583059 - 17588536

Intron Length:

5478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATCAT

U12 Branch Point Sequence:

CATGGTATGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.6

Major BPS

75.9

0.64

1.1

77.7

35.2

Major PPT

83.3

0.75

0.8

80.1

31.9

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

43.5

-0.4

2.1

60.16

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026402

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021196

17581565 - 17588603

7039