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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175849052_175883606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175849052 - 175883606
Intron Length:
34555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATTAACT
Flanking Amino Acid:
MGFLPKQVLREKHLLPV
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
66.4
0.59
2
87.83
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029951
175845639 - 175888091
42453
ENSAPLT00000028724
175845639 - 175887485
41847