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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175883687_175887207_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
175883687 - 175887207
Intron Length:
3521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CAACCTTTAAGG
Flanking Amino Acid:
MVSGSIAQQWADV
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.4
0.66
0.9
70
45
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
49.6
-0.1
1.7
50.6
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029951
175845639 - 175888091
42453