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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175887272_175887612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
175887272 - 175887612
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CGGTTTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
ACTGACCAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
70.2
0.45
1.1
69.2
41.8
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
44.1
-0.3
2.2
63.79
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029951
175845639 - 175888091
42453