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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17590508_17593573_F

Intron Information:

Intron Rank:
144603
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
17590508 - 17593573
Intron Length:
3066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCTCA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTAGCCTTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
61.6
39.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
79.6
0.67
0.9
79.1
34.3
Minor 5ss
52.6
0.09
2.3
65.8
45.3
Minor BPS
52
-0
1.8
56.66
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035261
17589578 - 17593735
4158