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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175915970_175917530_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175915970 - 175917530
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTAAGTGAATA
Flanking Amino Acid:
WKFLLRLTKGRFALMNRKVL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.7
80.7
30.9
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
46.6
-0.2
2.3
66.18
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687