About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175919147_175920800_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175919147 - 175920800
Intron Length:
1654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
SMYLASKLVETIYFKGIEAG
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.4
0.8
0.7
80.7
31.2
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687