About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175921696_175924815_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175921696 - 175924815
Intron Length:
3120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCGCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTGGGCTAATCC
Flanking Amino Acid:
FLGSFVSIYKGTSCFLRWVR
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
77
0.61
0.9
69.4
37
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
43.3
-0.5
2.3
57.3
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687