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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175924984_175930590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175924984 - 175930590
Intron Length:
5607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAATT
Flanking Amino Acid:
EDNCISYCIKGFIRMFSIGY
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.1
0.72
0.8
81.3
30.8
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
71.5
0.75
1.4
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687