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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175932970_175934466_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175932970 - 175934466
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTGTTTTATT
Flanking Amino Acid:
GLKGFTYSALKFIVGKEEIP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
53.3
0.18
2
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687