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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_175934548_176016446_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175934548 - 176016446
Intron Length:
81899

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTAAATAC
5'SS Class:
major
3'SS Sequence:
CTTCATCTACAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATACTTCATC
Flanking Amino Acid:
AITPLRHGEVSNPLQKILLF
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
57.5
36.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
62.5
0.28
1.1
61.2
38.9
Minor 5ss
23.6
-3
3.8
33
42.2
Minor BPS
51.8
0.04
1.9
63.88
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006484
175915837 - 176016523
100687