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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176071346_176075791_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
176071346 - 176075791
Intron Length:
4446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
ATTACATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CTGCATGTAATA
Flanking Amino Acid:
TLYIACFCILRKLLGKFYFW
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
78.6
0.64
0.9
74.5
39.6
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
43.8
-0.4
2.1
52.88
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027132
176071195 - 176076833
5639