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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176115910_176116753_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
176115910 - 176116753
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTCTCCTAACAC
Flanking Amino Acid:
IQYGCSSQLQFFLCSVYVPM
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
50.5
-0
2.1
67.09
44.5

Associated Gene:

Gene:
FZD4
Ensembl Gene ID:
ENSAPLG00000006281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025508
176115640 - 176120524
4885
ENSAPLT00000031504
176115640 - 176121351
5712
ENSAPLT00000006503
176115640 - 176139344
23705
ENSAPLT00000031353
176115640 - 176153498
37859
ENSAPLT00000027279
176115640 - 176127027
11388
ENSAPLT00000027084
176115640 - 176119091
3452