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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176117943_176139255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
176117943 - 176139255
Intron Length:
21313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATGCTTAACT
Flanking Amino Acid:
FMSLLVGITSGFVGLSRTWN
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.8
0.74
0.8
78.1
29.5
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
73.9
0.83
1.7
87.51
37.6

Associated Gene:

Gene:
FZD4
Ensembl Gene ID:
ENSAPLG00000006281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006503
176115640 - 176139344
23705