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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176213924_176223540_F

Intron Information:

Intron Rank:
124266
Intron Class:
major
Intron Phase:
Intron Coordinates:
176213924 - 176223540
Intron Length:
9617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.5
0.48
0.8
66.1
28.5
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
63.7
0.51
1.6
77.22
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026046
176213923 - 176224572
10650