Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176228101_176241031_R

Intron Information:

Intron Rank:

132932

Intron Class:

major

Intron Phase:

Intron Coordinates:

176228101 - 176241031

Intron Length:

12931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGATCAC

5'SS Class:

major

3'SS Sequence:

TTTCATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTATTTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

65.6

40.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.1

0.88

0.7

83.7

30.9

Minor 5ss

32.5

-2

3.2

43.3

44.4

Minor BPS

0.27

1.4

62.86

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033479

176226098 - 176243658

17561