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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176231533_176244299_F

Intron Information:

Intron Rank:
124958
Intron Class:
major
Intron Phase:
Intron Coordinates:
176231533 - 176244299
Intron Length:
12767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCACAA
U12 Branch Point Sequence:
AGTACCACAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
48.8
-0
1
54.9
31.1
Major PPT
88.7
0.87
0.7
81
31
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
45.9
-0.3
1.9
57.91
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019783
176231189 - 176244351
13163