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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176241102_176243144_R

Intron Information:

Intron Rank:
132933
Intron Class:
major
Intron Phase:
Intron Coordinates:
176241102 - 176243144
Intron Length:
2043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCCATTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78
38.3
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
74.7
0.56
1
71.3
38.4
Minor 5ss
32.8
-2
3
41.6
45
Minor BPS
57.1
0.22
1.3
61.7
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033479
176226098 - 176243658
17561