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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176252385_176252953_R

Intron Information:

Intron Rank:
134913
Intron Class:
major
Intron Phase:
Intron Coordinates:
176252385 - 176252953
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATGGACACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
61.6
0.26
1
51.9
41.9
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
58.8
0.27
1.8
73.77
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046697
176252220 - 176256948
4729