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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176294069_176328817_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
176294069 - 176328817
Intron Length:
34749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
GCCAGCTTAATG
Flanking Amino Acid:
CSHQIPAVLLGMAFTLQERL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
48.1
-0.2
1.9
48.21
45.5

Associated Gene:

Gene:
ME3
Ensembl Gene ID:
ENSAPLG00000006405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006722
176293453 - 176386441
92989