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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176330189_176348478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
176330189 - 176348478
Intron Length:
18290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTACAA
Flanking Amino Acid:
QQYGLAFRRPRGLFITIHDK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.4
0.75
0.7
77.7
31.1
Minor 5ss
27
-2.6
3
31.7
42.6
Minor BPS
49.9
-0
1.9
67.91
38.1

Associated Gene:

Gene:
ME3
Ensembl Gene ID:
ENSAPLG00000006405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022829
176257251 - 176386441
129191
ENSAPLT00000006722
176293453 - 176386441
92989