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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176357226_176371562_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
176357226 - 176371562
Intron Length:
14337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTACCC
Flanking Amino Acid:
IDEFMQAVTNKYGMNCLIQF
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
84.9
29.5
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
60.7
0.32
1.6
68.76
36.9

Associated Gene:

Gene:
ME3
Ensembl Gene ID:
ENSAPLG00000006405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022829
176257251 - 176386441
129191
ENSAPLT00000006722
176293453 - 176386441
92989