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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176381701_176382377_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
176381701 - 176382377
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TACTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTTATTTACT
Flanking Amino Acid:
HKFVFQGAGEAAMGIAHLIL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77.7
0.62
0.9
69
41.6
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
60
0.4
1.9
81.9
39

Associated Gene:

Gene:
ME3
Ensembl Gene ID:
ENSAPLG00000006405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022829
176257251 - 176386441
129191
ENSAPLT00000006722
176293453 - 176386441
92989