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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176385236_176386090_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
176385236 - 176386090
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
REVSFKIAVKIVNWAYKHGL
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.4
0.77
0.8
79.7
32
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
ME3
Ensembl Gene ID:
ENSAPLG00000006405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006722
176293453 - 176386441
92989